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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53423452_53424371_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53423452 - 53424371
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGGAA
5'SS Class:
major
3'SS Sequence:
ATGTATCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTGTCCTGAATG
Flanking Amino Acid:
SVVTAEQQQEPKAHQLSIKS
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.1
33
Major BPS
69.6
0.49
1
59.5
39
Major PPT
78.1
0.63
0.9
74.3
40.5
Minor 5ss
30.2
-2.3
3.5
37.5
41.7
Minor BPS
70.5
0.5
1.5
72.28
40.8

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041679
53402177 - 53494776
92600