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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53424462_53427085_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53424462 - 53427085
Intron Length:
2624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTAT
5'SS Class:
major
3'SS Sequence:
GTCACTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGGTATCTAATT
Flanking Amino Acid:
SPLARDLTFRTSSISEQETQ
Intron Amino Acid Position:
969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
73.8
33
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78.8
0.65
0.9
72.5
37.5
Minor 5ss
37.7
-1.4
3
45.6
43.6
Minor BPS
50.4
0.09
1.8
70.28
40.9

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035753
53402177 - 53494776
92600
ENSAPLT00000011055
53402785 - 53494776
91992
ENSAPLT00000041679
53402177 - 53494776
92600