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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53427977_53429474_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53427977 - 53429474
Intron Length:
1498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTGCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATTCAATAACT
Flanking Amino Acid:
RSSSLGSRTLDPLWKVRRSQ
Intron Amino Acid Position:
861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.7
0.47
1
65.8
39.7
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
66.9
0.61
1.9
88.12
35.9

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035753
53402177 - 53494776
92600
ENSAPLT00000011055
53402785 - 53494776
91992
ENSAPLT00000041679
53402177 - 53494776
92600