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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53432381_53433924_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53432381 - 53433924
Intron Length:
1544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTTGA
5'SS Class:
major
3'SS Sequence:
TTTGATTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ATTACTTTGATT
Flanking Amino Acid:
IRKLEKIRKELEAQLEEVAA
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
65.9
42.7
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
82
0.72
0.8
76.7
37.2
Minor 5ss
43.7
-0.7
3
58.5
46
Minor BPS
70
0.71
1.2
81.77
33.4

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041679
53402177 - 53494776
92600
ENSAPLT00000035753
53402177 - 53494776
92600
ENSAPLT00000011055
53402785 - 53494776
91992