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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53438111_53438212_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53438111 - 53438212
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
TCCGGATTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTGAATAACT
Flanking Amino Acid:
EKQDLNRKLQESTQTMQSLQ
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
68.3
42.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62
0.27
1.1
63.7
41.1
Minor 5ss
30.9
-2.2
2.6
36.9
40.1
Minor BPS
51
0.11
2.3
79.79
41.5

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041679
53402177 - 53494776
92600
ENSAPLT00000035753
53402177 - 53494776
92600
ENSAPLT00000011055
53402785 - 53494776
91992