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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53438380_53439391_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53438380 - 53439391
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATATTCTAACT
Flanking Amino Acid:
PFVGFTYTTDSSLSDRGTLK
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
55
0.24
1.7
72.84
37.6

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035753
53402177 - 53494776
92600
ENSAPLT00000011055
53402785 - 53494776
91992
ENSAPLT00000041679
53402177 - 53494776
92600