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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53448298_53453036_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53448298 - 53453036
Intron Length:
4739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
TCTCCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACGTAA
U12 Branch Point Sequence:
CAGTACGTAACT
Flanking Amino Acid:
HYAFQDENYLYLVMDYYVGG
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.6
40.8
Major BPS
49.8
-0
1.3
49.6
37.6
Major PPT
84.8
0.78
0.7
76.5
32.1
Minor 5ss
42.9
-0.8
3
54.6
44.9
Minor BPS
49.8
0.06
2.2
69.91
46.5

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035753
53402177 - 53494776
92600
ENSAPLT00000011055
53402785 - 53494776
91992
ENSAPLT00000041679
53402177 - 53494776
92600