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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53456675_53467501_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53456675 - 53467501
Intron Length:
10827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTTTGTTAAAT
Flanking Amino Acid:
KVIGRGAFGEVAVVKMKCTE
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.1
0.75
0.8
77.6
35.3
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
58.7
0.35
2.2
80.39
41.7

Associated Gene:

Gene:
CDC42BPB
Ensembl Gene ID:
ENSAPLG00000010525
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041679
53402177 - 53494776
92600
ENSAPLT00000035753
53402177 - 53494776
92600
ENSAPLT00000011055
53402785 - 53494776
91992