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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53549610_53552181_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53549610 - 53552181
Intron Length:
2572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTA
5'SS Class:
major
3'SS Sequence:
AATGTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
GTGTCCCCAAAT
Flanking Amino Acid:
PEEEGGPSSQAFPDAREKYP
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.6
43.3
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
69
0.43
0.9
59.1
42
Minor 5ss
33.3
-1.9
3.6
47.7
47.8
Minor BPS
49.5
0.04
2
71.68
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010511
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010934
53549520 - 53556535
7016