Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53599193_53600254_F

Intron Information:

Intron Rank:

133501

Intron Class:

major

Intron Phase:

Intron Coordinates:

53599193 - 53600254

Intron Length:

1062

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTACTTGGC

5'SS Class:

major

3'SS Sequence:

TGCCCTTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

TTCATTGGAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.35

1.2

54.8

42.9

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

76.6

0.6

0.8

68.9

37.1

Minor 5ss

32.5

-2

3.4

43.6

44.2

Minor BPS

46.6

-0.1

2.1

68.53

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021808

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040606

53598973 - 53605044

6072