Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53602011_53603872_F

Intron Information:

Intron Rank:

133503

Intron Class:

major

Intron Phase:

Intron Coordinates:

53602011 - 53603872

Intron Length:

1862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTAAGTCCT

5'SS Class:

major

3'SS Sequence:

TCATTCTCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TGTTTCTCATTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.1

68.3

42.6

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

79.4

0.66

0.8

77.9

30.6

Minor 5ss

38.8

-1.3

52.6

43.7

Minor BPS

53.3

0.08

1.8

66.91

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021808

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040606

53598973 - 53605044

6072