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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53668750_53669994_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53668750 - 53669994
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAA
U12 Branch Point Sequence:
TTGTGGTGAATG
Flanking Amino Acid:
LERKYLESEEATIKNSLNKC
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
84.1
26.4
Major BPS
56.9
0.17
1.3
49.1
46.3
Major PPT
81.7
0.71
0.8
76.9
32
Minor 5ss
32.6
-2
3
42.8
44.4
Minor BPS
44
-0.5
2.5
55.61
46.1

Associated Gene:

Gene:
TNFAIP2
Ensembl Gene ID:
ENSAPLG00000012637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013178
53658238 - 53674675
16438