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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53670121_53670599_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53670121 - 53670599
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTTTTTACAT
Flanking Amino Acid:
SELLAIFVIQSIYNGQKRAK
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
64.4
41.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
31.4
-2.1
3
38.9
46.2
Minor BPS
60.3
0.4
1.7
78.79
37.6

Associated Gene:

Gene:
TNFAIP2
Ensembl Gene ID:
ENSAPLG00000012637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013178
53658238 - 53674675
16438