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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53670887_53671075_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53670887 - 53671075
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTGTTCTGACCT
Flanking Amino Acid:
IANINNCGNFRDYVEKNMAE
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
60.9
0.42
1.8
80.19
41.9

Associated Gene:

Gene:
TNFAIP2
Ensembl Gene ID:
ENSAPLG00000012637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013178
53658238 - 53674675
16438