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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53672350_53673138_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53672350 - 53673138
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TCCTTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAGAT
U12 Branch Point Sequence:
TCCTTCCCAACA
Flanking Amino Acid:
LQTLKNPFYNATIEKIHVRL
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
74.1
38.3
Major BPS
49.4
-0
1.2
46.7
38.9
Major PPT
74.4
0.55
0.8
69.8
29.6
Minor 5ss
34.9
-1.7
2.9
40.4
38.9
Minor BPS
49.7
-0
1.9
63.62
42.9

Associated Gene:

Gene:
TNFAIP2
Ensembl Gene ID:
ENSAPLG00000012637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013178
53658238 - 53674675
16438