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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53674024_53674533_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53674024 - 53674533
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
TTCTCTCCCACA
Flanking Amino Acid:
ATLATAYPDIRRRHLEAFLY
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
33.7
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
81.5
0.71
0.7
76.3
25.9
Minor 5ss
30.2
-2.3
3.3
39
46.2
Minor BPS
45.6
-0.3
2.2
63.87
42.8

Associated Gene:

Gene:
TNFAIP2
Ensembl Gene ID:
ENSAPLG00000012637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013178
53658238 - 53674675
16438