About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53702698_53703906_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
53702698 - 53703906
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGGAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCACTGACCT
Flanking Amino Acid:
LPILKEFPDLREEHLSAVLD
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
56.3
0.14
1.2
59.3
39.9
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
54
0.2
1.9
79.84
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015755
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016416
53698532 - 53720810
22279