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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53704029_53707074_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53704029 - 53707074
Intron Length:
3046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
CTTTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TAGCTCTGAACA
Flanking Amino Acid:
TLQTIFKECLGPAAGALKDP
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.3
37.6
Major BPS
69.8
0.49
1
61
37.5
Major PPT
84.2
0.77
0.7
77.1
31.6
Minor 5ss
42
-0.9
3.1
61
38.4
Minor BPS
60.4
0.32
1.4
66.91
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015755
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016416
53698532 - 53720810
22279