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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53708790_53709394_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53708790 - 53709394
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CACTCTTTGACT
Flanking Amino Acid:
FLQTVTSKVKETLKDHFKKC
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
80.9
0.7
0.7
79.6
25.9
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
69.4
0.69
1.3
75.42
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015755
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016416
53698532 - 53720810
22279