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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53710675_53711426_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53710675 - 53711426
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
CLEECLSFLQSYENEVRNFL
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.1
0.9
0.7
90.1
24.5
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015755
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016416
53698532 - 53720810
22279