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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53711528_53713244_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53711528 - 53713244
Intron Length:
1717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGAATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGAAT
U12 Branch Point Sequence:
CTGCCTTGAATC
Flanking Amino Acid:
TPCADAAIVQIFREKMEAAQ
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
62.3
0.31
1.4
73.3
39.1
Major PPT
69.4
0.44
0.9
61.6
38.8
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
54.4
0.12
1.5
60.2
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015755
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016416
53698532 - 53720810
22279