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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53716578_53718325_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53716578 - 53718325
Intron Length:
1748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAC
U12 Branch Point Sequence:
GTTTTCTGCACG
Flanking Amino Acid:
VYEWCLKMYKSGSGTCLRPR
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
52.5
0.06
1.4
65.3
41.6
Major PPT
74.8
0.56
0.9
69.9
35.6
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
52.2
-0
2
64.64
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015755
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016416
53698532 - 53720810
22279