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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53718921_53720527_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
53718921 - 53720527
Intron Length:
1607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTTG
5'SS Class:
weak_major
3'SS Sequence:
CTCTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
TCAAGCTGAGCT
Flanking Amino Acid:
RKEAEGETSAEETVCEFIEQ
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
69.7
43.7
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
81.2
0.7
0.8
75.8
32.7
Minor 5ss
60.6
0.36
2.4
73.2
43.7
Minor BPS
44.8
-0.3
2.1
62.65
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015755
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016416
53698532 - 53720810
22279