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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53753854_53754214_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53753854 - 53754214
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGTATTTTAACT
Flanking Amino Acid:
PECENPETDLHVNPKKQTIG
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
69.8
0.7
1.2
79.52
36.2

Associated Gene:

Gene:
EIF5
Ensembl Gene ID:
ENSAPLG00000015675
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038934
53752074 - 53757416
5343
ENSAPLT00000016379
53750607 - 53757416
6810