Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53783368_53791057_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

53783368 - 53791057

Intron Length:

7690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

CTGGCTATGAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

TAATCATTATCT

Flanking Amino Acid:

PTVNERDTENDVGSSLGEGF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.3

69.3

35.8

Major BPS

80.4

0.76

80.3

31.8

Major PPT

51.4

0.03

1.2

52.2

40.8

Minor 5ss

29.9

-2.3

3.1

35.2

33.9

Minor BPS

61.4

0.44

1.9

79.85

41.3

Associated Gene:

Gene:

MARK3

Ensembl Gene ID:

ENSAPLG00000010536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045195

53783317 - 53843607

60291

ENSAPLT00000020582

53783317 - 53843607

60291

ENSAPLT00000017358

53783317 - 53843607

60291