Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53783368_53796475_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53783368 - 53796475

Intron Length:

13108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

GTTTGTATTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TCGGCCTTATCT

Flanking Amino Acid:

PTVNERDTENHTSHGDGRQE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.3

69.3

35.8

Major BPS

83.9

0.84

73.9

41.3

Major PPT

80.5

0.69

0.9

74.1

40.3

Minor 5ss

29.9

-2.3

3.1

35.2

33.9

Minor BPS

0.45

1.8

75.27

47.4

Associated Gene:

Gene:

MARK3

Ensembl Gene ID:

ENSAPLG00000010536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041899

53783317 - 53843607

60291

ENSAPLT00000037213

53783317 - 53844607

61291

ENSAPLT00000011002

53783317 - 53844607

61291