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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53791097_53796475_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53791097 - 53796475
Intron Length:
5379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCGGCCTTATCT
Flanking Amino Acid:
SSLGEGFCDKHTSHGDGRQE
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.5
0.69
0.9
74.1
40.3
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
62
0.45
1.8
75.27
47.4

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017358
53783317 - 53843607
60291
ENSAPLT00000045195
53783317 - 53843607
60291
ENSAPLT00000041695
53785570 - 53843607
58038
ENSAPLT00000024417
53785570 - 53844499
58930
ENSAPLT00000020582
53783317 - 53843607
60291