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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53796668_53802649_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53796668 - 53802649
Intron Length:
5982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
ATTCTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGATTATGAATT
Flanking Amino Acid:
LARHILTGREVAIKIIDKTQ
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.2
0.75
0.7
82
29.2
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
53.4
0.18
1.7
71.72
38.8

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017358
53783317 - 53843607
60291
ENSAPLT00000037213
53783317 - 53844607
61291
ENSAPLT00000011002
53783317 - 53844607
61291
ENSAPLT00000027843
53785570 - 53844499
58930
ENSAPLT00000045195
53783317 - 53843607
60291
ENSAPLT00000024417
53785570 - 53844499
58930
ENSAPLT00000041899
53783317 - 53843607
60291
ENSAPLT00000020582
53783317 - 53843607
60291
ENSAPLT00000041695
53785570 - 53843607
58038