Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53809548_53810234_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53809548 - 53810234

Intron Length:

687

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACCTTTT

5'SS Class:

major

3'SS Sequence:

CTTTCTCTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

AACTGATTAATA

Flanking Amino Acid:

IMKILNHPNIVKLFEVIETE

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.2

37.9

Major BPS

0.6

1.2

75.9

36.3

Major PPT

88.6

0.87

0.7

80.8

31.2

Minor 5ss

52.2

0.08

2.8

76.1

39.6

Minor BPS

49.1

-0

59.97

40.1

Associated Gene:

Gene:

MARK3

Ensembl Gene ID:

ENSAPLG00000010536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011002

53783317 - 53844607

61291

ENSAPLT00000027843

53785570 - 53844499

58930

ENSAPLT00000045195

53783317 - 53843607

60291

ENSAPLT00000024417

53785570 - 53844499

58930

ENSAPLT00000041899

53783317 - 53843607

60291

ENSAPLT00000020582

53783317 - 53843607

60291

ENSAPLT00000041695

53785570 - 53843607

58038

ENSAPLT00000017358

53783317 - 53843607

60291

ENSAPLT00000037213

53783317 - 53844607

61291