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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53818063_53818932_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53818063 - 53818932
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTACAAACC
Flanking Amino Acid:
QKHIVHRDLKAENLLLDADM
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.6
0.87
0.7
80.8
31.2
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
46.8
-0.2
2.1
66.37
38.9

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011002
53783317 - 53844607
61291
ENSAPLT00000027843
53785570 - 53844499
58930
ENSAPLT00000045195
53783317 - 53843607
60291
ENSAPLT00000024417
53785570 - 53844499
58930
ENSAPLT00000041899
53783317 - 53843607
60291
ENSAPLT00000020582
53783317 - 53843607
60291
ENSAPLT00000041695
53785570 - 53843607
58038
ENSAPLT00000017358
53783317 - 53843607
60291
ENSAPLT00000037213
53783317 - 53844607
61291