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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53819170_53819275_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53819170 - 53819275
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTACCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TACTCTTTTACC
Flanking Amino Acid:
SLPFDGQNLKELRERVLRGK
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
67.2
0.39
1.1
67.2
37.3
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
65
0.46
1.6
71.26
40.2

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020582
53783317 - 53843607
60291
ENSAPLT00000041695
53785570 - 53843607
58038
ENSAPLT00000017358
53783317 - 53843607
60291
ENSAPLT00000037213
53783317 - 53844607
61291
ENSAPLT00000011002
53783317 - 53844607
61291
ENSAPLT00000027843
53785570 - 53844499
58930
ENSAPLT00000045195
53783317 - 53843607
60291
ENSAPLT00000024417
53785570 - 53844499
58930
ENSAPLT00000041899
53783317 - 53843607
60291