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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53821479_53823187_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53821479 - 53823187
Intron Length:
1709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAAT
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAAAAAT
U12 Branch Point Sequence:
TTGCTTTTTAAG
Flanking Amino Acid:
SQKQRRYSDHAGPSIPPVVA
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.4
37.7
Major BPS
48
-0.1
1.2
53.6
38.7
Major PPT
78.7
0.65
1
83.1
32.3
Minor 5ss
36.1
-1.6
3
49.4
46.6
Minor BPS
46.6
-0.4
1.8
53.07
42.1

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024417
53785570 - 53844499
58930
ENSAPLT00000041899
53783317 - 53843607
60291
ENSAPLT00000020582
53783317 - 53843607
60291
ENSAPLT00000041695
53785570 - 53843607
58038
ENSAPLT00000017358
53783317 - 53843607
60291
ENSAPLT00000037213
53783317 - 53844607
61291
ENSAPLT00000011002
53783317 - 53844607
61291
ENSAPLT00000027843
53785570 - 53844499
58930
ENSAPLT00000045195
53783317 - 53843607
60291