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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53823406_53828144_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53823406 - 53828144
Intron Length:
4739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTTAATTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATT
Flanking Amino Acid:
ERKKSSAVPSNNTAPGAMTR
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.5
0.75
0.8
79.2
32.9
Minor 5ss
37.1
-1.5
2.8
43.2
43.8
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017358
53783317 - 53843607
60291
ENSAPLT00000041695
53785570 - 53843607
58038
ENSAPLT00000011002
53783317 - 53844607
61291
ENSAPLT00000037213
53783317 - 53844607
61291
ENSAPLT00000027843
53785570 - 53844499
58930
ENSAPLT00000045195
53783317 - 53843607
60291
ENSAPLT00000020582
53783317 - 53843607
60291
ENSAPLT00000041899
53783317 - 53843607
60291