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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53827474_53828144_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53827474 - 53828144
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTCTA
5'SS Class:
major
3'SS Sequence:
TTTTTAATTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATT
Flanking Amino Acid:
TLFLCKDRGKNNTAPGAMTR
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
73.6
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.5
0.75
0.8
79.2
32.9
Minor 5ss
39.6
-1.2
3
50.6
39.9
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024417
53785570 - 53844499
58930