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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53828249_53832904_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53828249 - 53832904
Intron Length:
4656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGAA
5'SS Class:
major
3'SS Sequence:
AACCCCCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACCCAA
U12 Branch Point Sequence:
TCTGCCTGAACC
Flanking Amino Acid:
HSVIQNGKENSLTEMFAYAA
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
72.7
31.7
Major BPS
48.6
-0
1.1
56.4
30.9
Major PPT
65.7
0.35
0.9
57.4
32.3
Minor 5ss
37.4
-1.4
3.2
48.5
47.7
Minor BPS
68.2
0.55
1.6
75.11
41.5

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027843
53785570 - 53844499
58930
ENSAPLT00000045195
53783317 - 53843607
60291
ENSAPLT00000024417
53785570 - 53844499
58930
ENSAPLT00000041899
53783317 - 53843607
60291
ENSAPLT00000020582
53783317 - 53843607
60291
ENSAPLT00000041695
53785570 - 53843607
58038
ENSAPLT00000017358
53783317 - 53843607
60291
ENSAPLT00000037213
53783317 - 53844607
61291