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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53833070_53833785_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53833070 - 53833785
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGAACC
5'SS Class:
major
3'SS Sequence:
TTTTCTGCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAGAA
U12 Branch Point Sequence:
GAAGTTCTAGCG
Flanking Amino Acid:
IDNGADNFRPITIPDQRTPV
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.6
33.7
Major BPS
50.4
0.01
1.1
47.3
36.1
Major PPT
81
0.7
0.8
74.1
36.7
Minor 5ss
37.2
-1.5
3
50.1
39
Minor BPS
39.7
-0.9
1.8
38.35
38.2

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017358
53783317 - 53843607
60291
ENSAPLT00000037213
53783317 - 53844607
61291
ENSAPLT00000027843
53785570 - 53844499
58930
ENSAPLT00000045195
53783317 - 53843607
60291
ENSAPLT00000024417
53785570 - 53844499
58930
ENSAPLT00000041899
53783317 - 53843607
60291
ENSAPLT00000020582
53783317 - 53843607
60291
ENSAPLT00000041695
53785570 - 53843607
58038