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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53834044_53836437_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53834044 - 53836437
Intron Length:
2394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTGTTAATT
Flanking Amino Acid:
FSKLTSKLTRRNMSFRFIKR
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.9
0.67
0.8
78.3
35.6
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
71
0.74
2
91.07
32.9

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011002
53783317 - 53844607
61291
ENSAPLT00000037213
53783317 - 53844607
61291
ENSAPLT00000027843
53785570 - 53844499
58930
ENSAPLT00000024417
53785570 - 53844499
58930
ENSAPLT00000045195
53783317 - 53843607
60291
ENSAPLT00000017358
53783317 - 53843607
60291
ENSAPLT00000041695
53785570 - 53843607
58038