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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53834044_53840981_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
53834044 - 53840981
Intron Length:
6938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCAATGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAATG
Flanking Amino Acid:
FSKLTSKLTRRLPTEYERNG
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
56
0.14
1.7
71.1
38.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
57.7
0.1
1.6
62.38
40.7

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020582
53783317 - 53843607
60291