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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53834044_53843261_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53834044 - 53843261
Intron Length:
9218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAC
U12 Branch Point Sequence:
TGACTAAAAACT
Flanking Amino Acid:
FSKLTSKLTRSRNVAVDQKD
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
52.9
0.07
1.1
59.6
32.7
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
42.4
-0.5
2
61.32
41.6

Associated Gene:

Gene:
MARK3
Ensembl Gene ID:
ENSAPLG00000010536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041899
53783317 - 53843607
60291