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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53864558_53865142_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53864558 - 53865142
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACTAATTAAAC
Flanking Amino Acid:
KKLRLQKRGTGGVDTAAVGG
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.3
0.61
0.9
68.6
37.3
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
50.3
-0
1.9
63.54
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010931
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029275
53864318 - 53871077
6760
ENSAPLT00000026172
53864379 - 53871856
7478
ENSAPLT00000011409
53864318 - 53871077
6760