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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53866206_53867681_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53866206 - 53867681
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ATATCCATATTG
Flanking Amino Acid:
ARDWPDARGIWHNDNKTFLV
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
76.7
0.6
0.8
69.5
36.8
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
49.8
-0.1
1.9
59.85
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010931
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029275
53864318 - 53871077
6760
ENSAPLT00000026172
53864379 - 53871856
7478
ENSAPLT00000011409
53864318 - 53871077
6760