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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53867854_53868726_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53867854 - 53868726
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CCATCCTAAAAG
Flanking Amino Acid:
RRAIEKLSVEALGSLGGDLK
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
49.7
-0.1
1.9
53.07
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010931
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026172
53864379 - 53871856
7478
ENSAPLT00000011409
53864318 - 53871077
6760
ENSAPLT00000029275
53864318 - 53871077
6760