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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_53869748_53870226_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53869748 - 53870226
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAATGC
5'SS Class:
major
3'SS Sequence:
ATTACCACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
ACTTTATTACCA
Flanking Amino Acid:
DVIQTGVDNPGHPFIMTVGC
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
61.9
37.7
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
71
0.47
0.9
60.3
40.7
Minor 5ss
37.8
-1.4
3.2
47.6
43.3
Minor BPS
52.8
0.08
1.9
66.18
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010931
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011409
53864318 - 53871077
6760