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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54001191_54003162_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54001191 - 54003162
Intron Length:
1972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GAATTTCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTAAAACA
Flanking Amino Acid:
PNDEDDQGQGIQQQHSSAAA
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.6
0.62
0.9
74
41
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
50
-0
1.9
67.02
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006410
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006689
53982002 - 54024045
42044