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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54003389_54003860_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54003389 - 54003860
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
CTTTAAAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTCTCTTTAAAA
Flanking Amino Acid:
TMLNILALVYRDQNKYKDAA
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
67.5
0.39
1
64.6
40.4
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
68.9
0.59
1.4
71.99
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006410
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006689
53982002 - 54024045
42044