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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54006771_54006860_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54006771 - 54006860
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCCG
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TATAACTTAAAT
Flanking Amino Acid:
MHAEEREECKGKQKDGTSFG
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
60.7
43.9
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
32.8
-2
3.3
40.3
39.5
Minor BPS
64.9
0.55
1.7
81.08
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006410
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006689
53982002 - 54024045
42044