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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54006929_54008827_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54006929 - 54008827
Intron Length:
1899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCATTTTTAATA
Flanking Amino Acid:
GGWYKACKVDSPTVTTTLKN
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.9
0.58
0.9
73.5
35.6
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
70.2
0.63
1.1
71.01
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006410
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006689
53982002 - 54024045
42044