Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54008937_54012335_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54008937 - 54012335

Intron Length:

3399

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAAGTATG

5'SS Class:

strong_major

3'SS Sequence:

ATCCAATTATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TTTTATCCAATT

Flanking Amino Acid:

EEAAMRSRKQGLDNVHKQRV

Intron Amino Acid Position:

553

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.1

1.16

0.7

90.9

28.7

Major BPS

70.8

0.52

70.6

31.6

Major PPT

66.4

0.37

63.5

41.1

Minor 5ss

-2.4

3.8

41.5

45.1

Minor BPS

49.8

0.07

78.01

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006689

53982002 - 54024045

42044