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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54012471_54023979_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54012471 - 54023979
Intron Length:
11509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATAAT
U12 Branch Point Sequence:
CCCCCCTTCACA
Flanking Amino Acid:
YESGPDGGEEERNNCLTDSR
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
57.5
0.19
1.3
60.2
42.9
Major PPT
69.4
0.44
0.8
63.8
30.2
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
54.1
0.12
1.8
60.03
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006410
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006689
53982002 - 54024045
42044