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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54031404_54032459_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54031404 - 54032459
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTTTCTTTATAG
Flanking Amino Acid:
GESEAAQCGCSSVDNKVTPA
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.6
0.71
0.8
76.3
32.4
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
57
0.08
1.8
64.12
44

Associated Gene:

Gene:
XRCC3
Ensembl Gene ID:
ENSAPLG00000006917
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047272
54031181 - 54044061
12881
ENSAPLT00000021316
54029670 - 54044061
14392
ENSAPLT00000007190
54031181 - 54044061
12881